Showing posts with label Genetic engineering. Show all posts
Showing posts with label Genetic engineering. Show all posts

Wednesday, October 17, 2018

3048. How Gene Drive Organisms Could Entrench Industrial Agriculture and Threaten Food Sovereignty

By ETC Group, October 16, 2018 (World Food Day) 


More than 200 global food movement leaders and organizations representing hundreds of millions of farmers and food workers set out their clear opposition to “gene drives” – a controversial new genetic forcing technology. Their call for a stop to this technology accompanies a new report, Forcing the Farm, that lifts the lid on how gene drives may harm food and farming systems. 
Gene drives are a genetic engineering tool that aims to force artificial genetic changes through entire populations of animals, insects, and plants. Unlike previous genetically modified organisms (GMOs) these gene drive organisms (GDOs) are deliberately designed to spread genetic pollution as an agricultural strategy – for example, spreading ‘auto-extinction’ genes to wipe out agricultural pests. Agri-research bodies now developing these extinction-organisms include the California Cherry Board, the US Citrus Research Board, and the private California company Agragene Inc. Next month, the United Nations Biodiversity Convention will meet to discuss measures to control this technology, including a possible moratorium.
The Forcing the Farm report, researched and produced by ETC Group and The Heinrich Boell Foundation, details several ways in which gene drive technology is being readied for application in agriculture. The report exposes how gene drive developers are deliberately keeping agricultural applications from view while trying to focus public interest on high profile health and conservation projects. Reports of secret meetings with a US defense committee show that agribusiness firms such as Monsanto-Bayer and Cibus Bioscience appear to be engaging with gene drive development. 
Gene Drives and Agriculture: Six examples drawn from Forcing the Farm
  • Gene drives are being engineered into flies, insects, worms and other pests to spread sterility as a biological alternative to pesticides.
  • Researchers are proposing using gene drives as a breeding tool to increase meat production in livestock.
  • “Auto-extinction” gene drives are being engineered into rats and mice as well as beetles that affect storage of grains.
  • Patents have been sought to engineer gene drives into honey bees to control pollination patterns using light beams.
  • Research is ongoing to engineer gene drives into common weed species to make them more susceptible to herbicides such as Roundup.
  • Analysis of two key patents on gene drives show that they each reference around 500-600 agricultural uses including brand names of 186 herbicides, 46 pesticides, 310 agricultural pest insects, nematodes, mites, moths and others 
If your organization would like to sign on to the call for a moratorium against gene drives, email genedrives@synbiowatch.org

Sunday, July 1, 2018

2955. Artificial Nature: Deleting a Species

By Rowan Jacobsen, Pacific Standard, June 20, 2018

In a windowless London basement, behind three sets of locked steel doors and a wall of glass, thousands of Anopheles gambiae mosquitoes cling like Marvel supervillains to the sides of white mesh cubes. The room is negatively pressurized, so air is constantly sucked inward to ensure that the mosquitoes, which have been subjected to a new and astonishingly powerful kind of genetic engineering, never escape.

If the modifications to these whining mosquitoes were perfected, and they were somehow able to make their way to sub-Saharan Africa, they would have an effect on their kin unlike any animal that has ever existed. The Anopheles are equipped with a genetic tool that ensures that they are either sterile—they can't produce viable eggs—or, if fertile, that they will pass that sterility gene on to nearly every offspring. And the same would be true for their descendants, which would continue to spread the genetic sabotage into future generations.

If some future version of the mosquitoes were released, these deadly modifications could spread through the African tropics, crashing the population as they went. And because Anopheles is the primary African vector for the parasite that causes malaria, its collapse would likely take down malaria with it. Within a few years, the last great scourge of humanity, which kills upwards of half a million people per year, would be vanquished on the African continent. It would be one of the greatest health achievements of all time. And yet the intentional eradication of a species is not something we should pursue without a lot of foresight, and the release of highly invasive genetically modified organisms (GMOs) into the wild is itself deeply disturbing.

Known as a gene drive, the ability to force particular genes into future generations of an entire species only became available to humans with the development of CRISPR, the gene-editing tool that has enabled us to make precise changes to an organism's DNA. Kevin Esvelt was a fellow at Harvard University's Wyss Institute for Biologically Inspired Engineering in 2013 when he figured out how to build a gene drive. In a 2014 paper, he proposed several applications for his invention, including hobbling weeds that had become resistant to herbicides, reducing malaria-carrying mosquitoes, and eliminating invasive rodents on islands, where they wreak havoc on indigenous birds and plants.

Many traditional conservationists were horrified by the prospect, yet other groups embraced it. The Gates Foundation made gene drive a centerpiece of its anti-malaria efforts, and the eco-warriors at Island Conservation, who have long used poison to combat invasive mice and rats, seized on gene drive as a more precise weapon in their war to save native species. New Zealand is considering using a gene drive in its push to eliminate invasive rodents, weasels, and possums by 2050. Kevin Esvelt wants to engineer mice that are immune to the bacterium that causes Lyme disease, whose cycle of transmission goes from mice to ticks to people. Dengue, Zika, and several other mosquito-borne diseases are promising gene-drive targets. A lab in California is working to limit the damage caused by an invasive species of fruit fly, and labs in Australia and Texas are developing "daughterless mice" (capable of conceiving only male offspring). The first gene-drive field trials are anticipated within the next decade.

With earlier-generation GMOs, such as Monsanto's Roundup Ready crops, arguments often hinged on the potential for those genes to escape into the environment. Conservationists believed escape was inevitable, while corporations downplayed the risk, but nobody was suggesting that GMOs be let loose in nature—until now.

When I first heard about gene drive, I thought of "ice-nine," the form of water in Kurt Vonnegut's 1963 novel Cat's Cradle that is solid at room temperature and acts as a seed crystal for adjacent water molecules, turning them solid. At the end of Cat's Cradle, the frozen body of a man who has committed suicide by drinking ice-nine falls into the sea, and all the world's oceans and rivers are forever frozen, extinguishing most life on Earth. Gene drives have similar dystopian potential. In theory, a single lab could alter the entire planet. And the technology has arrived far quicker than our ability to grapple with its staggering implications.

Gene drives work by gaming inheritance, forcing their way into the genetic make-up of future generations. Sexually reproducing species usually have two versions of each of their genes, one inherited from each parent, and they randomly pass one of those to each offspring. Individuals that inherit more useful genes thrive, and are therefore more likely to reproduce and pass on those good genes, while individuals that inherit disadvantageous genes are less likely to get the chance to reproduce. In this way, evolution causes detrimental genes to disappear from the gene pool.

Conventional genetic engineering is limited by the rules of reproduction. Most engineered traits have a 50/50 chance of being passed down, and unless a trait confers some advantage to the organism, it should eventually disappear. Since most genetic engineering to date has bred traits that benefit people, not the organisms themselves, so far no GMOs have made significant inroads into nature. But a gene drive can practically guarantee inheritance. And since beneficial genes are favored by natural selection anyway, the unique value of engineering a gene drive lies in propagating a detrimental trait, possibly even all the way up to extinction.

To make a gene drive, you start with the gene-editing tool CRISPR, which consists of two parts: a gene-slicing enzyme and a string of genetic code that tells the enzyme where to cut. CRISPR is shockingly easy to use. You don't need a world-class lab, and you don't have to be a genius. I've created antibiotic-resistant bacteria in a friend's kitchen. You just order your CRISPR from a DNA-synthesis company (the going rate is $65 plus shipping), specifying the exact 20-letter sequence of DNA you want it to target. It arrives as a few drops of liquid in a test tube. You add that liquid to another test tube containing cells of the organism you want to modify, along with any new DNA you want inserted, then heat it up. 

The CRISPR finds the spot, makes the cut, and the new DNA gets stitched in place.
Kevin Esvelt was part of the team at Harvard that helped develop CRISPR, and he was the first to realize that the CRISPR mechanism itself could be inserted directly into an organism's genome to create a gene drive. Once there, the CRISPR would eliminate the natural counterpart of the gene it is attached to, and the cell would copy the functioning, genetically engineered version of the gene (containing the CRISPR) in its place. The organism would then have two working copies of the CRISPR gene, one of which would be guaranteed to be passed down to each of its offspring, where the process would repeat, until virtually every individual in a population carried the engineered trait.

It was a brilliant insight, with enormous implications. According to the unwritten rules of science, Esvelt's next move should have been to quietly create a gene drive in his lab and then publish a paper announcing the achievement to the world and staking his claim to it. Instead, he paused to consider the consequences.

When I first met Esvelt in 2017 at Editing Nature, a summit convened at Yale University's Institute for Biospheric Studies to weigh the ramifications of engineering the wild, I was struck by his demeanor. He seemed haunted and tightly wound, as if he'd just come from a dark future he was hoping to save us from. His boyish smile and wispy blond hair reminded me of Tintin, but his gravelly, leading-man's voice vibrated in an unusual timbre. Like the long dungchen horns of Tibetan monks, it seemed to resonate with both awe for the world and sorrow for its eventual passing.

As soon as Esvelt realized how easy it would be to build a gene drive, he knew he had a potential ice-nine on his hands. "This thing self-scales," he told the biologists, conservationists, and ethicists gathered at Yale that day. "You can't run a field trial. You can't introduce it anywhere in the endemic environment without having it spread probably to every population."

After his 2013 discovery, Esvelt knew others would soon hit upon the same insight, and he felt that the runaway nature of gene drive was not something that could be trusted to biotech specialists working in isolation. "Your decision to go ahead and build it in the lab means that you are performing an experiment that could affect other people," he said. "And if you don't tell them that you're doing it in advance, you're actively denying them a voice in the decision. And frankly, that's wrong."

Esvelt pictured the headline sure to follow an accidental gene-drive release: "Scientists Convert Entire Species to GMOs. Is CRISPR to Blame?" He feared that a botched trial could turn the public against the technology and destroy its vast potential. So shortly after their breakthrough, he and his colleagues at the Wyss Institute called a meeting of top ecologists, biologists, ethicists, and national security experts. They explained the technology to the group, and discussed the best plan of action. And their remarkable conclusion was that the only way to ethically explore the potential of gene drive was to change the culture of science. "We need to at least tell other people what we are thinking of doing before we even begin experiments," he explained. "This is difficult, because every incentive in science points against it. If you share your brilliant idea, you're inviting some larger, better-funded lab with spare hands to steal it, get it working first, publish, and get the credit."

Esvelt decided to make an example of himself. He published his paper before doing any experiments, with the hope that all gene-drive research would follow the precautions and protocols he laid out, the most important of which was pre-registration of all experiments so they could be vetted by all potential stakeholders. Since then, he has spent as much time lobbying against the unwise use of gene drives as he has advocating for them, sometimes using language that distresses his fellow scientists. "We are walking forwards blind," he said in a 2016 interview that is frequently cited by gene-drive opponents. "We are opening boxes without thinking about consequences. We are going to fall off the tightrope and lose the trust of [the] public."

Not since Robert Oppenheimer has a scientist worked so hard against the proliferation of his own creation. "When you see something that is technically sweet, you go ahead and do it and you argue about what to do about it only after you have had your technical success," Oppenheimer said in 1954. "That is the way it was with the atomic bomb."

And that is how it has been with gene drive. Esvelt now runs something called the Sculpting Evolution group at the Massachusetts Institute of Technology. When I sat down in his office and asked him if he had convinced many scientists to forego the technical sweets, he shrugged. "It will never happen unless we change the incentives," he said. "Most scientists, however supportive in theory, say they just can't take the risk." The allure of scientific immortality—or at least tenured professorship—is simply too strong, and while those working with gene drives claim to follow rigorous safety protocols, few are willing to openly share what they are inventing behind the closed doors of their labs.

We are on the cusp of a gene-drive explosion. Many agricultural pests are potential targets, as are weeds that have evolved resistance to Roundup. California's cherry growers are funding gene-drive research to eliminate the spotted-wing fruit fly, which lays its eggs in soft fruits. Tata Trusts of India recently gave the University of California–San Diego $70 million to train a new generation of Indian scientists to use gene drives for agriculture and disease control. And in the fall of 2017, the biotech firm Oxitec released genetically engineered diamondback moths (which infest broccoli, cabbage, and other brassicas) in a field trial in upstate New York. The moths carry a gene that kills females in the larval stage, and though there is no gene drive involved at present, it would be a logical next move.

The most vocal critics of gene drives have been two conservation organizations, Friends of the Earth and the ETC Group. Jim Thomas, co-executive director of ETC, told me that, for all the emphasis on curing disease and saving endangered species, he sees "Big Ag" lurking in the background. "Ultimately, I think that's where this technology lands," he said. "It becomes a kind of insecticide. If there's money to be made here, that's what’s going to drive it." Thomas sees potential for abuse in the developing world. "How does a powerful technology shift power relations? And what does that mean for those that are marginalized and vulnerable?"

In September of 2016, 30 environmental luminaries, including Jane Goodall, David Suzuki, and Vandana Shiva, joined with ETC to publish an open letter calling for a moratorium. "We believe that a powerful and potentially dangerous technology such as gene drives, which has not been tested for unintended consequences nor fully evaluated for its ethical and social impacts, should not be promoted as a conservation tool," they wrote. "Given the obvious dangers of irretrievably releasing genocidal genes into the natural world, and the moral implications of taking such action, we call for a halt to all proposals for the use of gene drive technologies."

Friends of the Earth joined ETC in bringing the call for a moratorium to the December 2016 meeting of the United Nations' Convention on Biological Diversity, which covers the equitable use and regulation of biological resources, including genetically modified organisms. The Convention has previously halted controversial technologies such as ocean fertilization and sterile-seed crops by establishing moratoria, but with gene drive it merely called for better risk-assessment. Friends of the Earth and ETC vowed to continue to rally support for a moratorium, which will be debated in Montreal this July and then voted on at the next meeting in Egypt this December.

Most gene-drive scientists accuse these groups of exaggerating the risks of genetic engineering and playing to the public's fears, but Natalie Kofler, who founded Yale's Editing Nature initiative to facilitate public deliberation around gene editing, thinks it's vital to take their point of view seriously. "The followers of those groups share a worldview with many people that I discuss this with on a daily basis," she told me. "They feel deeply that it is wrong to tamper with the DNA of wild things. There's a sacredness to it that we shouldn't mess with. And that is a worldview that is very quickly dismissed by scientists and technologists. And because it's not being acknowledged as something valid for discussion, I think it's creating a huge polarization."

Still, Kofler finds the idea of a ban on research "totally ridiculous." This is a brand-new technology, she said. "Right now we don't know nearly enough about how it works, how the public perceives it, or how it will impact the environment to take stances of opposition or support. Right now, we need to be comfortable to stay in the gray zone—to comprehensively explore this issue with the degree of openness and transparency that it deserves. So, if anything, more research—scientific and sociological alike—needs to take place."

Jim Thomas points out that there's a difference between a moratorium and a perpetual ban: "There's a feeling that taking a judicious pause and taking the time to think carefully means nothing is ever going to move forward. But that's not what a moratorium is."

When the stakes are as high as they are with gene drive, who could argue with a judicious pause? People in Africa, Esvelt says. Every year you delay work on gene drives, another half-million people die. "Who am I to tell somebody who's lost children to malaria, and has more children at risk, that they can't do it because somebody else doesn't agree? Why should some people get veto power over a technology that could save the lives of other people's children?"

And yet, despite that sentiment, Esvelt keeps making things more difficult for his colleagues. Last November, I along with several other journalists received an unusual email from him. 

"I'm writing because we have a couple of papers coming out next week that are personally embarrassing for me, but are likely consequential enough for gene drive, conservation, and science policy that you might find them interesting," he wrote. What followed was a surprising statement: "My decision to list invasive species control as a potential application of gene drive in our original 2014 eLife paper was an embarrassing mistake.... It was profoundly wrong of me to even suggest it." Additional modeling, he explained, showed that gene drives were even riskier than he'd thought. For that reason, one of his new papers concluded, with the possible exception of malaria, "we should not even consider building drive systems likely to spread indefinitely beyond the target area."

The new papers triggered a wave of fresh panic in the media. "'Gene Drives' Are Too Risky for Field Trials, Scientists Say" reported the New York Times. Most of the coverage focused on Esvelt's mea culpa, and when we met in his MIT office shortly after, I asked him if that was the reaction he'd expected.

"Of course!" he responded. "I'm not totally naive. 'Inventor tries to stuff genie back in bottle'—that's a story. It doesn't happen very often that a scientist says, 'I was wrong.' Maybe it should happen more often."

Esvelt believed that other researchers were underestimating the risk of engineered organisms escaping a field test, even on an isolated site, in part because of a wild card beyond the scope of any mathematical model—human nature. "You build it, you try it anywhere, and someone who has an interest is going to move it illegally to take advantage. It would be totally cost-effective for someone to hire mercenaries to fly in, capture mice, and fly out again. But that's not the sort of thing most scientists think about."

I was reminded of Jeff Goldblum's chaos mathematician in Jurassic Park. "If there's one thing the history of evolution has taught us," he warns the park's designers, "it's that life will not be contained. Life breaks free. It expands to new territories and crashes through barriers painfully, maybe even dangerously.... Life finds a way."

Some of Esvelt's colleagues saw the move as a publicity stunt: Instead of drives "likely to spread indefinitely," Esvelt was recommending a new, self-limiting type called Daisy Drive that he had recently designed. In Daisy Drive, multiple drives are linked in an organism's genome in a kind of daisy chain. Drive A drives Drive B, and B drives C, and C drives D, and so on. But because nothing drives A, it follows normal inheritance patterns and gets quickly diluted in the gene pool. Those individuals who don't inherit A have nothing to drive B, which then gets diluted in subsequent generations. Like the stages of a rocket, the drives continue to fall away until the whole system stops working after a set number of generations. In theory, Daisy Drive allows you to affect a local population for a set amount of time.

Esvelt now hopes to use a self-limiting drive such as Daisy to combat Lyme disease in the northeastern United States, where it has become so prevalent that many people no longer risk walking in the woods and fields. Almost 40 percent of Nantucket residents have reportedly contracted Lyme disease, and that is where Esvelt has proposed to begin his "Mice Against Ticks" experiment, as well as on neighboring Martha's Vineyard. To make sure the local stakeholders understand the implications, Esvelt has been holding community forums on the islands since 2016, and most residents seem open to the idea. After an initial field test on an isolated and uninhabited island, he would release thousands of Lyme-resistant mice on Nantucket and Martha's Vineyard. If all went well, the eventual goal would be to release Daisy Drive mice on the mainland. The Lyme infection cycle would then be broken, and eventually, the Daisy Drive would disappear as well. After a few generations, the mice would revert to normal.

A number of self-limiting drives have now been proposed by Esvelt and other researchers, but so far they exist only on paper, which makes Jim Thomas skeptical. "Precision in biology and ecosystems is a bit of a pipe dream," he told me. Ecosystems are remarkably complex, and viruses and parasites have tremendous capacities to evolve.

When I mentioned this critique to Esvelt, he gave me a knowing nod. "The thing everyone is overlooking is, how do you know your gene drive is going to behave over time the way you intend? We've never before engineered something that we anticipate to evolve out of our control. Perfect prediction is impossible." But unlike the skeptics, he believes you can get close enough to proceed with confidence. "You need to model very large populations over multiple generations. We can't do that in mice or mosquitoes, but we can in worms."

And they are. This winter, on the sixth floor of a nondescript MIT office building, behind a locked door with a black-and-orange Biosafety Level 2 warning sign, I held up dozens of petri dishes filled with what looked like twitching, emaciated commas. These were roundworms, C. elegans, also known as nematodes, and there were 5,000 to 10,000 of them per dish, reproducing every three days. "We can do 100 generations in a year with a population of 100 million," Esvelt told me. "If we really wanted to push it, we could probably do a population of a billion. I can't think of another organism that would let us do that."

One of Esvelt's postdocs placed a dish of worms under a microscope and turned on a black light. Through the lens, I could see the silvery squiggles snaking through the agar, eating bacteria. Each had a glowing red esophagus thanks to a fluorescent gene (originally from a jellyfish) that made it easier to track which ones had received the genetic modifications.

These worms will be the first organisms on Earth to harbor a Daisy Drive. Their lives will be confined to thousands of test tubes managed by a liquid-handling robot that can be programmed to move precise amounts of liquid between tubes. Each test tube will harbor an isolated population of worms, so the Sculpting Evolution team can test what happens when Daisy Drive worms invade a new, unmodified population. They can also test whether an engineered drive evolves into something unexpected, given enough time and population growth, and whether an "immunizing reversal drive" can be built that will target such a runaway drive and reset it.

Eventually, the worms could have enough genetic diversity to serve as a decent stand-in for any wild population, and all experiments on them will be pre-registered for feedback from the scientific community. To keep life from finding a way, Esvelt told me the project has five layers of safety containment: physical (the roundworms are kept in a locked lab, and they aren't nearly as mobile as mice, mosquitoes, or fruit flies), ecological (there are no wild C. elegans to breed with on the mean streets of Cambridge), reproductive (most wild C. elegans are hermaphrodites and aren't interested in sex anyway), molecular (the self-limiting Daisy system), and more molecular (the gene drive targets a unique DNA sequence that has been engineered into the Sculpting Evolution worms but isn't found in wild worms).

If all gene-drive research hewed to these standards, I'd sleep better at night. But despite the recommendations from Esvelt, as well as the National Academy of Sciences, there are currently no binding rules in place. And even if everyone currently working on gene drives behaves responsibly—and they seem to be—it's easy to see how, eventually, as the technology spreads, someone, somewhere along the way, will get sloppy.

Public alarm grew louder in December of 2017, with the release of a cache of 1,200 emails between scientists and other gene-drive proponents that had been obtained through the Freedom of Information Act. "Gene Drive Files Expose Leading Role of U.S. Military in Gene Drive Development," announced a press release, which noted that most gene-drive projects—including the London mosquitoes, Texas mice, and MIT roundworms—were being funded by the Department of Defense's Advanced Research Projects Agency (DARPA) as part of its Safe Genes program. Although DARPA had publicly announced it was funding the projects months earlier, this was not well known to the general public, and a number of news outlets ran with the story. The Guardian's headline read, "U.S. Military Agency Invests $100m in Genetic Extinction Technologies."

In its response, DARPA pointed out that its goals were defensive: "Our feeling is that the science of gene editing, including gene drive technology, has been advancing at a rapid pace in the laboratory," wrote the agency's chief of communications. "These leaps forward in potential capability, however, have not been matched by advances in the biosafety and biosecurity tools needed to protect against potential harm if such technologies were accidentally or intentionally misused."

The Safe Genes projects focus on learning to limit the reach of gene drives and on ways to detect and disable them, but none of that comforts Jim Thomas. "This has been the history of bioweapons research," he told me. "It's always presented as supposedly defensive: 'We have to develop these tools so we can respond in case someone else develops them.'" Thomas fears the agency's agenda may be much broader. "They're putting a finger in every single major gene-drive project so they can be close to them. So they can understand how these things work." Thomas worries that Daisy Drive is the equivalent of small-scale, tactical nukes. "Once you have this illusion that you can locally control a gene drive, then that opens the door for using it in agriculture or as a weapon." But few experts believe gene drives could make an effective weapon against other people—they are just too slow and obvious. There are easier ways to wage war.

During my most recent visit with Esvelt, I asked if he could imagine some situations where the technologies were too risky to pursue, even in a confined environment. Easily, he said. "There are areas where I would say, no research. And have!" It was after hours on a cold winter night in Cambridge, and Esvelt was looking even more pale and ragged than usual. Still, I pressed him for details. What kind of technology would be too dangerous for research? He shook his head and said, "There are some things I’ve thought of that I'm never going to tell another living soul."

When any new technology arrives, the debate veers toward the best- and worst-case scenarios, the big dreams and the big fears. Gene drives are going to cure malaria. Gene drives are going to become bioweapons. That's our nature. But it's easy to forget how rarely the extremes come to be.

The real test will be after we have a few minor successes controlling diseases or agricultural pests with gene drive. Suddenly we will have one of the greatest hammers ever invented, and we will go looking for nails. Every fast-reproducing plant or animal whose behavior we don't like will be a candidate for redesign. Cockroaches that hate the scent of garbage. Poison ivy that doesn't cause a rash. Fire ants with no fire. There are loose nails everywhere that just need a few whacks to make our lives more comfortable.

"Why not?" goes the counterargument. We've been hammering nature for years. Pollution, habitat destruction, pesticides, insecticides, greenhouse gases. Yale doesn't convene an ethics panel every time somebody clear-cuts a forest or dynamites a reef to harvest the fish. Why is it different once genes are involved?

And yet it is.

Anyone who's ever taken the time to hike to the pristine valley or paddle to the uninhabited island knows the sublimity of finding oneself in a place where the agenda is non-human. It's a reminder that there are ways of being in the world that have little or nothing to do with human ways, patterns of existence that get us out of our own heads and expand the conversation of what it means to be a quivering coil of DNA on the third planet from the sun. It's a form of diversity, and every species is a kind of culture, a cohesive and elegant web of quirks, predilections, and traditions.

We've dammed Glen Canyon. We've littered Everest with ropes and oxygen tanks. Our pawmarks are all over even the wildest places. But we have yet to conquer the DNA of wild things. For the time being, that frontier has been visited by only a handful of early explorers.

In deciding if we have the right to drive a gene through a species, we might think of each genome as a national park, an untrammeled space in a non-geographical dimension. A refuge from an increasingly humanized world. I can hate the whine of a mosquito in my tent and still revere the pristine landscape of its genome. Engineering that genome would be like putting a road system through the Gates of the Arctic. There would be some obvious benefits—and something less obvious would be lost forever.

With every new technology, we tend to shoot first and ask questions later. It's a dynamic built into the DNA of our culture, which rewards the intrepid individuals who plant their flag on the virgin coast. Those ice-nine mosquitoes in their negative-pressure vault may end up being hugely important. They may, in fact, be a gift. A living metaphor of interconnectedness and of consequences, they may force us to consider if the time has come to throw out the Age of Exploration model and create a new system of science that rewards wisdom over cleverness.

That's a big ask, and it may seem absurd right now, as we survey the vast genetic frontier stretching away before us. How could we not poke around just a little? But we have a lot of experience with lost frontiers at this point, so perhaps there's still time to ask what we ought to do with this one. What if, after gazing from the decks of their caravels at the towering forests and teeming estuaries of the New World, the early explorers went back to their funders in Europe and said: Sure, we could make the place safe and productive. We could fill it with cities and farms and factories. But here's the thing: It isn't bad the way it is. It's full of mysteries and other ways of being. So ... this is going to sound crazy, but what if we just left it alone?

Wednesday, May 25, 2016

2335. Organic Farmers Are Not Anti-Science but Genetic Engineers Often Are

By Elizabeth Henderson, Independent Science News, May 24, 2016

Elizabeth-Henderson (photo courtesy Audrey Horn)
Elizabeth Henderson. Photo: courstesy of Audrey Horn.
At one of the public brainstorming sessions for the New York Organic Action Plan, an organic farmer made an impassioned plea for support for “independent science” and told us that with 8.5 billion mouths to feed by 2050, we will need genetic engineering to prevent starvation.

I would like to examine these words carefully to decipher what they mean, how those words are used by this farmer and by others, and suggest how the movement for locally grown organic food in this country should respond.
What is the meaning of ‘independent science’? As co-chair of the Policy Committee for the Northeast Organic Farming Association of New York (NOFA-NY), I have been an active participant in the coalition that is campaigning to pass GMO labeling legislation in NY State. In this capacity, I have spoken at public meetings, to the press and on radio interviews. A question that I have heard from proponents of biotechnology is “why do you organic farmers oppose science, like the climate deniers?”
The first time I heard this, I was startled and felt defensive. Had I ever opposed science?  I searched back through things I had written and reviewed all the policy resolutions the members of NOFA-NY had passed over the years. I found a few places where I criticized reductionist science and defended “indigenous knowledge” (that is things like composting and crop rotations that people who practice a craft know and pass on to their children that has not been proven by research at a university). But nowhere could I find any statement opposing science. Just recently, I reviewed with approval this statement from an organic farming group:
“We support the International Federation of Organic Agricultural Movement’s (IFOAM) definition that organic agriculture is a production system that sustains the health of soils, ecosystems and people. It relies on ecological processes, biodiversity and cycles adapted to local conditions, rather than the use of inputs with adverse effects. Organic agriculture combines tradition, innovation and science to benefit the shared environment and promote fair relationships and a good quality of life for all involved.”
My farm has cooperated in any number of research projects with Cornell University scientists.  We have tested cover crops, held a field day with the Cornell soil health group to allow them to demonstrate the ways a farm can test for biological activity, use a penetrometer, and a rain simulator that shows how much aggregate stability the soils have. We spent 7 years working with Molly Jahns and her team on breeding a variety of sweet pepper. It is earlier ripening, cucumber mosaic virus resistant, and is open-pollinated (and now bears the name of our farm – Peacework!). I served for four years on the Sustainable Agriculture Research and Education Program technical committee and three years on the administrative council. Unlikely activities for someone who is against science.
So what does this question about independent science really mean? I have come to understand that by “science” the biotech folks mean genetic engineering. They are deliberately conflating these two terms. And that seems to be how the farmer at our meeting was using the words too.
So since I do not oppose science, do I oppose genetic engineering? Yes and no. I share with geneticists their fascination with the functioning of the tiniest of particles that make up living matter. One of my favorite books is A Feeling for the Organism (by Evelyn Fox Keller, 1984), a biography of Barbara McClintock (1902-1992), a cytogeneticist who specialized in corn. McClintock was one of the first to map the corn genome. She demonstrated that genes turn physical characteristics on and off and discovered genetic transposition or “jumping genes.” She shook the notion that science held as a truth that the genome is a stationary entity with the genes in an order that is unchanging by showing that it is subject to alteration and rearrangement. For many years, the mainstream of science regarded her with disapproval only eventually to catch up with her and then heap honors on her great discoveries. Science lurches forward – and a great leap is yet to be made for a full comprehension of the relationship between genes and the environment.
The more geneticists look into it, the more complex the relationship of genes to physical traits turns out to be. As Jonathan Latham puts it:
“a defined, discrete or simple pathway from gene to trait probably never exists. Most gene function is mediated murkily through highly complex biochemical and other networks that depend on many conditional factors, such as the presence of other genes and their variants, on the environment, on the age of the organism, on chance, and so forth. Geneticists and molecular biologists, however, since the time of Gregor Mendel, have striven to find or create artificial experimental systems in which environmental or any other sources of variation are minimised so as not to distract from the more “important” business of genetic discovery.
“But by discarding organisms or traits that do not follow their expectations, geneticists and molecular biologists have built themselves a circular argument in favour of a naive deterministic account of gene function. Their paradigm habitually downplays the enormous complexities by which information passes (in both directions) between organisms and their genomes. It has created an immense and mostly unexamined bias in the default public understanding of genes and DNA.” (Latham, op cit)
McClintock’s story reveals how hard it is for the scientific mainstream to accept new concepts. This becomes especially difficult when large commercial entities like chemical/seed corporations build their empires on an interpretation of a scientific phenomenon. And even more difficult when our universities are starved for public research funds and become dependent on corporate support.
I am not against genetic engineering in principle, nor is the organic movement internationally. What we are against is the rush to commercialize crops that have not been adequately tested for safety. There is so much we do not know about them. When you move one gene, many other genes shift and geneticists do not know enough yet to predict the results (Wilson et al., 2006). That is why standards for organic certification in the US and all around the world do not allow the use of genetically engineered seed or other materials like GE rennet in cheese. In regulating any novel technology, we should follow the precautionary principle. Test carefully and at length before commercializing. This has not been done with GE crops. Every cultivar is different and each one should be tested individually (Maffini et al., 2013GAO, 2010).
Meanwhile, corporations like Monsanto, Dow, Syngenta, etc. have been commercializing a very few money-making GE cultivars that farmers are growing on millions of acres that are doused with toxic chemicals.
The scientific evidence shows that the widespread adoption of genetically engineered crops in the US has led to: 1) an increase in pesticides used in agriculture, according to the U.S. Department of Agriculture’s Pesticide Data Program; 2) development of herbicide resistance in over 20 weed species; 3) insecticide resistance in target pests, including corn rootworms; 4) increased residues of pesticides in foods, including Roundup, a probable human carcinogen; 5) loss of biological diversity, including Monarch butterflies, and 6) massive increases in seed costs for farmers (Huber, 2011).
EPA provides annual average use estimates for the decade 2004-2013. According to Carey Gillam in “What Is Going On With Glyphosate? EPA’s Odd Handling of Controversial Chemical” (May 3, 2016):
“Seventy crops are on the EPA list, ranging alphabetically from alfalfa and almonds to watermelons and wheat. Glyphosate used on soybean fields, on an annual basis, is pegged at 101.2 million pounds; with corn-related use at 63.5 million pounds. Both those crops are genetically engineered so they can be sprayed directly with glyphosate as farmers treat fields for weeds. Cotton and canola, also genetically engineered to be glyphosate tolerant, also have high use numbers. But notable glyphosate use is also seen with oranges (3.2 million lbs.); sorghum (3 million lbs.); almonds (2.1 million lbs.); grapes, (1.5 million lbs.); grapefruit and apples (400,000 lbs. each); and a variety of fruits, vegetables and nuts.”
Since 1974, farmers have poured 1.8 billion kilograms of Roundup on fields (Benbrook, 2016). While independent studies of the safety of GE foods are scarce (because the owners of the Utility Patents of GE plants refuse to allow truly independent research), there are many studies of Round-Up and its main ingredient glyphosate that show it attacks the beneficial organisms in the human digestive system, causing serious health problems – increased birth defects, neurological developmental problems in children, kidney failure, respiratory problems, allergies (Sparling et al., 2006; Benedetti et al., 2013Lopez et al., 2012Mesnage, et al., 2015 Marin-Morales et al., 2013; Gress et al., 2015). Studies show that Roundup is a powerful soil biocide, resulting in the increase of microbial plant pathogens and mycotoxins (Johal and Rahe, 1988Fernandez et al., 2005; Kremer and Means, 2009Johal and Huber, 2009).
The use of GE crops is part of the whole package of industrialized farming, an integrated system that enables corporate control of our food system (for the results of this see Fig 1 Glyphosate Tolerance Levels since 1993; taken from Benbrook, 2016).
Glyphosate tolerance levels since 1993 (EPA)
GLYPHOSATE TOLERANCE LEVELS SINCE 1993 (EPA)
There has been a speed-up in farming – a grain farmer used to be able to support a family with 160 acres.  Now it takes 1600.  The Roundup-GE package goes with the speed-up. And US government regulation has failed to protect the public from the toxic herbicides that farmers spray on GE crops.
One selling point of Roundup is that it breaks down quickly. That is why you can purchase it off the shelf in garden/hardware stores.  That is accurate – it does break down quickly. But what Monsanto does not mention is that Roundup breaks down into AMPA, which lasts much longer and may be more toxic than glyphosate. (Torstensson 1985; Torstensson et al., 1989Andréa et al., 2003Battaglin et al., 2014).
Recently, the World Health Organization declared glyphosate a probable carcinogen, and many studies since 1985 have shown it to be an endocrine disruptor. But that did not stop the Environmental Protection Agency in 2013 from increasing the amount of glyphosate that is considered safe as a residue in soy beans, corn and other crops (see fig.).
It is extremely unscientific and poor public policy for the patent office, a federal agency, to grant billions of dollars of utility patent rights for GE technology based on a demonstration of material difference, and for FDA, another federal agency, to be simultaneously denying consumers basic information about the use of that technology in their food, based on that agency’s finding of a lack of material difference.
Internal FDA documents obtained by the Alliance for Bio-Integrity during a 1998 lawsuit against the agency reveal that the FDA’s Biotechnology Coordinator, James Maryanski, knew full well the potential risks but chose to override them. A November 1, 1991 memo to Maryanski titled “Points to Consider for Safety Evaluation of Genetically Modified Foods. Supplemental Information”, detailed the potential problems with new genetically engineered crops:
increased levels of known naturally occurring toxicants, appearance of new, not previously identified toxicants, increased capability of concentrating toxic substances from the environment (e.g. pesticides or heavy metals) and undesirable alterations in the levels of nutrients.” (cited in Druker, 2015).
Despite this, the FDA claimed, and continues to assert that genetically engineered foods are perfectly safe and has classified them as “generally regarded as safe” or GRAS under current FDA guidelines.
The utility patents which Monsanto and other corporations hold on seed give them control over every use of that seed – including research to test it for safety.  Farmers are not allowed to save and share the seed. University scientists must have permission from the patent holder and have to pay royalties to do research on patented seed. That is a significant barrier to independent science. By contrast, the Open Source Seed Initiative (OSSI) allows seed purchasers free use of the seed and asks for a pledge
“not to restrict others’ use of these seeds or their derivatives by patents or other means, and to include this Pledge with any transfer of these seeds or their derivatives.” (FEDCO 2016 catalogue, p. 3).
Unfortunately, we do not live in a sweet world where researchers are free to work for the people and the earth and where decisions on what research gets funded are made purely on the basis of which projects benefit the largest number of poor and hungry people in former imperial colonies.
Just as the biotech proponents conflate “science” and GMOs, I and the organic movement conflate our struggle for family-scale, local, organic or agroecological agriculture and against corporate control with the fight against gmos. Buying Roundup Ready seed is not a free choice for farmers. Using that seed ensnares the farmer in Monsanto’s clutches.
There are economic issues here as well. Major Goodman of North Carolina State University, a respected corn geneticist and member of the National Academy of Sciences, stated in testimony before the National Research Council that conventional breeding typically costs about $1 million per trait, while genetic engineering costs $136 million per GE trait, with most of the cost due to research and development, not to regulatory expenses.
If we could assemble a council of farmers and scientists to evaluate the most cost-effective ways to invest public resources to eliminate world hunger, it is doubtful that they would choose genetic engineering. The 2008 United Nations International Assessment of Agricultural Knowledge, Science and Technology for Development (IAASTD), a comprehensive report on the future of farming, authored by 400 scientists and backed by 58 governments, stated that yields of GM crops were “highly variable” and in some cases, “yields declined”. The IAASTD concluded that since 70% of the world’s population is fed by small farms, many run by women, the best course would be to increase investments in agroecology (IAASTD, 2009).
That means doing the kind of work that the organic farmers of the Northeast (under the auspices of NOFA and MOFGA) have been doing for over four decades – helping family-scale farmers, homesteaders and gardeners learn more about how to produce the healthiest, most nutrient dense food using local resources and providing ways for them to share this learning with one another.  Farmer to farmer – campesino to campesino. Scientists who respect the “indigenous” knowledge of farmers can help the way Molly Jahns’ team did in the Peacework pepper breeding project.
If some of the millions spent on genetic engineering were directed to farmer-scientist organizations like Masipag (Farmer-Scientist Partnership for Development) in the Philippines and the National Organic Agriculture Movement of Uganda (NOGAMU), there would be much more progress towards local self-reliance.
I am totally with the organic farmer who declared at our meeting that agriculture needs applied research and technology and that our Land-Grant universities should invest in applied research programs to find the solutions to the complex problems facing farmers today. The division of farmers into two camps – organic and conventional – is destructive and prevents us from learning from one another. It would help all farmers if the USDA research apparatus had funding to support organic research programs at higher levels than the current barely 2 percent of all USDA research dollars.
So at this time, I do not think the organic movement should drop our opposition to allowing certified organic farms to use GE crops.  We should continue to campaign for labeling GMOs. We should call upon Cornell to disband its propaganda arm for GMOs – the Alliance for Science – or repurpose it under the guidance of a board that represents the interests of the people of NY State. We should not oppose continuing research in genetic engineering, but we should demand that equal resources go into agroecology. Independent Science is a great concept.  Let’s work together with conventional farmers for applied research that keeps our farms in business and allows us to grow the healthiest food for all the people while regenerating our soils and arresting climate change.
PS. I urge defenders of GMOs to read Altered Genes, Twisted Truth: How the Venture to Genetically Engineer Our Food Has Subverted Science, Corrupted Government, and Systematically Deceived the Public, by Steven M. Druker (Clear River Press, 2015).

References


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Benbrook, C (2016) Trends in glyphosate herbicide use in the United States and globally. Environmental Sciences Europe 28: 3 DOI: 10.1186/s12302-016-0070-0.
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